Glyma07g30180 - SoyBase

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Report for Sequence Feature Glyma07g30180

Feature Type:	gene_model
Chromosome:	Gm07
Start:	35234455
stop:	35236200
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g30180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17050	AT	Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 78D2 \| chr5:5607828-5609392 REVERSE LENGTH=460	SoyBase	E_val: 4.00E-134	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0047213	GO-mf	Annotation by Michelle Graham. GO Molecular Function: anthocyanidin 3-O-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080043	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF71	Panther	UDP-GLUCORONOSYL/UDP-GLUCOSYL TRANSFERASE FAMILY P	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_D3Y5N8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UGT78K1 n=1 Tax=Glycine max RepID=D3Y5N8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KL63	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KL63_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g30180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g30180

Paralog	Evidence	Comments
Glyma08g07130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g30180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g183200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g30180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g30180

Limit To All Plant Sequences

>Glyma07g30180.1   sequence type=CDS   gene model=Glyma07g30180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATCAAAACAAACACGTAGCAGTCTTTGCTTTCCCCTTTGGCAGCCACCTTATGCCTCTCTTAAACCTTGTCCTCAAACTAGCTCATTCCCTTCCAAACTGTTCATTCTCTTTCATTGGCACACACAAATCCAATGCAATCCTTTTCCCAAAACCCCACATCCCAAATAACATCAAGGCCTATAGCATAAGTGATGGAATCCCAGAGGGTCACGTCCTAGGCAAAAACCCAACTGAAAAATTGAATCTTTTTCTCCAAACTGGTCCTGAGAACCTTCACAAAGGTATAGAATTAGCGGAAGCAGAGACAAAGAAGAGAGTCACATGCATCATTGCAGATGCTTTAGTAACCTCTTCTCTCCTAGTGGCTCAGACCCTCAATGTTCCTTGGATTGCACTTTGGCTTCCCAATTCATGCTCACTCTCTCTCTATTTCTACACTGACTTGATTCGCCAGCACTGTGCAAGCCGTGCTGGGAACAAAACCTTGGATTTCATTCCAGGGCTGTCGAAGTTGCGTGTTGAAGACATGCCACAGGATCTGCTTGATGTTGGAGAAAAAGAAACAGTTTTTTCAAGGGAACTAAATTCGCTAGGTAAGGTGCTACCTCAAGCTAAGGTAGTAGTTATGAATTTCTTTGAGGAATTGGAACCACCTTTGTTTGTTCAAGACATGAGAAACAAGTTGCAGTCTTTGCTTTATGTTGTTCCACTTCCTTCCACGTTGTTGCCACCATCTGACACAGATTCAAGTGGTTGCTTGTCATGGTTGGGTATGAAGAACTCTAAATCGGTGGCTTATGTTTGCTTTGGGACTGTGGTGGCACCACCTCCACATGAGCTTGTGGCAGTGGCAGAGGCATTGGAAGAAAGTGGCTTTCCTTTTCTGTGGTCTCTGAAGGAAGGTCTAATGAGTCTTTTGCCAAATGGGTTTGTTGAGAGGACCAAGAAGCGTGGGAAAATAGTGTCTTGGGCTCCACAAACCCATGTTTTGGCTCATGATTCTGTAGGAGTTTTTGTGACTCACTGTGGAGCTAACTCTGTGATTGAGAGTGTTTCCAGTGGTGTTCCTATGATCTGCAGGCCATTCTTTGGAGATCAAGGGGTGGCTGCAAGAGTGATAGAAGATGTTTGGGAGATTGGGATGATGATAGAAGGTAAGATGTTCACCAAAAATGGATTGGTGAAGAGCTTGAATTTGATTCTGGTGCATGAAGAAGGGAAGAAGATTAGAGACAATGCTCTTAGGGTGAAGAAGACTGTGGAAGATGCAGGTAGGCCTGAAGGGCAAGCAACACAAGATTTCAACACTCTGGTGGAAGTAATTTCTAGATCTTAA

Predicted protein sequences of Glyma07g30180

Limit To All Plant Sequences

>Glyma07g30180.1   sequence type=predicted peptide   gene model=Glyma07g30180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHQNKHVAVFAFPFGSHLMPLLNLVLKLAHSLPNCSFSFIGTHKSNAILFPKPHIPNNIKAYSISDGIPEGHVLGKNPTEKLNLFLQTGPENLHKGIELAEAETKKRVTCIIADALVTSSLLVAQTLNVPWIALWLPNSCSLSLYFYTDLIRQHCASRAGNKTLDFIPGLSKLRVEDMPQDLLDVGEKETVFSRELNSLGKVLPQAKVVVMNFFEELEPPLFVQDMRNKLQSLLYVVPLPSTLLPPSDTDSSGCLSWLGMKNSKSVAYVCFGTVVAPPPHELVAVAEALEESGFPFLWSLKEGLMSLLPNGFVERTKKRGKIVSWAPQTHVLAHDSVGVFVTHCGANSVIESVSSGVPMICRPFFGDQGVAARVIEDVWEIGMMIEGKMFTKNGLVKSLNLILVHEEGKKIRDNALRVKKTVEDAGRPEGQATQDFNTLVEVISRS*

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